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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015917357.1_cds_XP_016466977.1_59775
CDS Infomation

[gene=LOC107789635] [db_xref=GeneID:107789635] [protein=coiled-coil domain-containing protein SCD2-like] [protein_id=XP_016466977.1] [location=complement(join(78104..78222,78389..78515,84332..84372,85005..85052,85487..85550,89256..89377,89475..89588,92164..92224,92314..92361,93321..93395,93746..93773,93860..93909,94152..94214,94349..94390,94587..94662,95155..95717,95951..96046,96155..96379))] [gbkey=CDS]
Sequence

ATGCAGGGTCAGGGGCACGCGCGGTCAGCGTCAGGGTCAAATGCGGTACGGCGGCCGCAG
AATGCAAAGGCGGCGGCGCAGAGGCTGGCTCAGGTAATGGCGTATCAACAAGCCGATGAC
GACGATGAGGAAGACGAGCTGTATGAATACAACCCTGTGGCTTTGGCTCCCTCTACTGCT
GCTATTGGCCTTGGTGGAAGGCCCAATCGAACTCGTACTCCTCTGTCAGTCCGGACATCC
ATCGAACCACAGGCATCGACTACCCGTCCGGCATCACTAGGAATCCGGCCATCTGCATCT
ACTGACTCTTTAGGTCAAAAGCCAGTTCGTGCATCCACAGAAGCAAATGCATCAGCTACA
CGTCCAGCATCAATCCGTACATCCATAGAACAACATGCACTGACTGCACGTCCAGCATCA
GTATTAGGAATCAGACCATCTTCGTCTTCGGAGTCTTTAGATCAGCAGCCTATGTCAGCT
CGTTCAACGACGCCTATTCGAACTTCTCTCCGATCAGGCTCCTCCTTAGAACATCAACAG
CAACAGCATGTACATGTTCATCAACATTCTCATTCATCTATCCAAACCACTTCTTCTACT
TCGGCAGCTGTCCCGAGTAAGCTAACTTTTCAATCTAAAAACACTTTGGAACAACCACCA
TCTGCTCGCGCACCTACTACACCTTTGGCTGGCAATCAATTATCGTCTCAATCCAGCATC
CCGGAACAGCCTCTATCTGCTCGTGCTCTAGCAGCTAACCGCTCGGGTCACTTCGGTGGC
AAGTCAGTTCCTGTTGTACCTTCTAATGTGCCTCTCTCGCTCAGGCCAGTTGGTTCTAAT
GCAGCTGCAATTGAGCCTCAACCTGAAGCTCGTAAAGATAAAAGGTTATCAGTAGATTTT
GGTACTTTCAAGTATAAAGAACCTCCCACTCAGCCGTCTTCATCTGCTTTACAAGATGAG
GTTGACATGCTTCAAGAAGAGAATGAAAGTTTACTCGAAAAGCTTCGACTTGCAGAAGAG
CGTTGTGAAGAAGCTGAGGCAAGGGCTAGGCAGCTTGAGCAGCAGGTTGCCAATCTTGGG
GAAGGTGTGTCAATGGAGGCTCGTCTTTTAAGCAGGAAACAAGCAGCTTTACAACAAAGG
GAGGCTGCTCTAAAAGTTGCAGCACAAACTTATGGTGGAAAAAGTGATGAGCTTGCAGCT
CTTCGAACAGAAGCTGAGTCCCTGCGAACTATGACTCGAAGAATGATACTGAGTCAAGAA
GAGATGGAAGAGGTTGTTCTCAAGAGGTGTTGGCTTGCACGCTATTGGAGTTTATGCGTC
CACTATGGTATTCACACAGACGTAGCTGGAGCAAAACAAGAATACTGGTCATCCCTTGCC
CCTTTACCTTTGGAAGTTGTGTTGGAGGCAGGGCAAAAAGCTAAAGATGAGAACTCATTA
CTTTACAATGATCCAGAGGAAAGGGAAGCACTTCCGCATGATCTGAGTGAACTTTCAGGA
GACGGGAATGTTGAAAGTATGCTACTAGTGGATAAAGGTCTTCGGGAACTGACATCACTA
AAGGTAGAAGGAGCAGTAGCCCTAGCAATGGCCCAACAAAGGCGCCTAACTGCACTCAGA
GCTACAGATGACATGAGGCTACCAATGGAAGGCCAGAGCTTTTCAGAAGCATTTGAATTG
AGTCCGGAGGAGACAGAAGATGTGCAGTTTAAGCAGGCGTGGCTCACATACTTGTGGAGA
AGAGCCAAAAATCATGGAGTGGAACCAGATATTGCAGAGGAGAGATTACAGTTTTGGATT
AACCAAGGTGGTCAACCTCTCACTTCACATGATGCTGTTCATGTCGAGCGTGGCCTCATA
GAGCTCAAGAAATTGGGGATTGAAACCCAATTATGGAAAGAATCTCGCCGATCCATAGAT
CCTGAAAACACCCAAAAAATGCAAAAGGAAAATGATTTTTGA

Peptide Sequence

PEP ID

XP_016466977.1
PEP Infomation

PREDICTED: coiled-coil domain-containing protein SCD2-like [Nicotiana tabacum]
Sequence

MQGQGHARSASGSNAVRRPQNAKAAAQRLAQVMAYQQADDDDEEDELYEYNPVALAPSTA
AIGLGGRPNRTRTPLSVRTSIEPQASTTRPASLGIRPSASTDSLGQKPVRASTEANASAT
RPASIRTSIEQHALTARPASVLGIRPSSSSESLDQQPMSARSTTPIRTSLRSGSSLEHQQ
QQHVHVHQHSHSSIQTTSSTSAAVPSKLTFQSKNTLEQPPSARAPTTPLAGNQLSSQSSI
PEQPLSARALAANRSGHFGGKSVPVVPSNVPLSLRPVGSNAAAIEPQPEARKDKRLSVDF
GTFKYKEPPTQPSSSALQDEVDMLQEENESLLEKLRLAEERCEEAEARARQLEQQVANLG
EGVSMEARLLSRKQAALQQREAALKVAAQTYGGKSDELAALRTEAESLRTMTRRMILSQE
EMEEVVLKRCWLARYWSLCVHYGIHTDVAGAKQEYWSSLAPLPLEVVLEAGQKAKDENSL
LYNDPEEREALPHDLSELSGDGNVESMLLVDKGLRELTSLKVEGAVALAMAQQRRLTALR
ATDDMRLPMEGQSFSEAFELSPEETEDVQFKQAWLTYLWRRAKNHGVEPDIAEERLQFWI
NQGGQPLTSHDAVHVERGLIELKKLGIETQLWKESRRSIDPENTQKMQKENDF

Transcript Sequence

Gene sequence data has not been registered.